| City of Brass | #62 | $10.95 |
| April O'Neil, Human Element | #107 | $9.65 |
| Raphael, Tag Team Tough | #118 | $6.93 |
| Mona Lisa, Ever Adaptable | #126 | $6.00 |
| Undergrowth Stadium | #80 | $5.66 |
| Irma, Part-Time Mutant | #12 | $4.99 |
| Endless Foot Assault | #8 | $4.98 |
| Spire Garden | #75 | $4.97 |
| Michelangelo, the Heart | #5 | $4.95 |
| Utrom Monitor | #113 | $4.89 |
| Raphael, the Muscle | #4 | $4.57 |
| Michelangelo, On the Scene | #124 | $4.47 |
| Donatello, the Brains | #2 | $4.05 |
| Leonardo, the Balance | #1 | $3.58 |
| Ninja Pizza | #32 | $3.23 |
| Fabled Passage | #67 | $2.81 |
| Splinter, the Mentor | #3 | $2.63 |
| Heroes in a Half Shell | #6 | $2.34 |
| Vigor | #53 | $2.33 |
| Coin of Mastery | #38 | $2.17 |
| Sol Ring | #59 | $1.80 |
| Splinter, Aging Champion | #104 | $1.65 |
| Shredder, Shadow Master | #20 | $1.28 |
| Assassin's Trophy | #55 | $0.91 |
| Big Mother Mouser | #37 | $0.89 |
| Blasphemous Act | #47 | $0.88 |
| Splinter & Leo, Father & Son | #103 | $0.87 |
| Leonardo, Worldly Warrior | #101 | $0.76 |
| Arcane Signet | #57 | $0.69 |
| Dragonskull Summit | #64 | $0.64 |
| Sodden Verdure | #74 | $0.56 |
| Arcade Cabinet | #36 | $0.50 |
| Donatello, Rad Scientist | #109 | $0.49 |
| Casey Jones, Asphalt Hooligan | #115 | $0.42 |
| Big Apple, 3 a.m. | #42 | $0.42 |
| Krang, the All-Powerful | #13 | $0.41 |
| Donnie & April, Adorkable Duo | #111 | $0.39 |
| Sunken Hollow | #76 | $0.39 |
| Containment Protocol | #108 | $0.39 |
| Ray Fillet, Wave Warrior | #14 | $0.39 |
| Exotic Orchard | #66 | $0.38 |
| Casey & Raph, Hotheads | #114 | $0.38 |
| Casey Jones, Back Alley Brute | #22 | $0.37 |
| Manhole Cover | #130 | $0.37 |
| Rat King, Pale Piper | #19 | $0.37 |
| Mikey & Mona, Mutant Sitters | #125 | $0.37 |
| Game Over | #18 | $0.36 |
| Rootbound Crag | #72 | $0.36 |
| Command Tower | #63 | $0.36 |
| Smoldering Marsh | #73 | $0.36 |